In Audacity, you can set up chains that can batch process a whole folder of audio. You can make them by going to File > Edit Chains and choosing which effects/settings you want to do.
You may be interested in normalization (which will amplify/quiet all the audio to the same level) and EQ.
(However... this processing is a little bit pointless for UTAU. Resamplers already normalize the audio anyway, and EQ is best applied during mixing.)